HL_9G8M_022

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

9G8M|1|L5|A|1630, 9G8M|1|L5|G|1633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G8M_022 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.1161

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9G8M|1|L5|G|1627
9G8M|1|L5|C|1628
9G8M|1|L5|G|1629
9G8M|1|L5|A|1630
9G8M|1|L5|A|1631
9G8M|1|L5|A|1632
9G8M|1|L5|G|1633
9G8M|1|L5|A|1634
9G8M|1|L5|C|1635

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LN

60S ribosomal protein L15

Chain Lj

60S ribosomal protein L37