HL_9GFT_038
3D structure
- PDB id
- 9GFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUUCGAAUCC
- Length
- 11 nucleotides
- Bulged bases
- 9GFT|1|A3|C|57, 9GFT|1|A3|G|58
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9GFT_038 not in the Motif Atlas
- Homologous match to HL_5E81_236
- Geometric discrepancy: 0.469
- The information below is about HL_5E81_236
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_23827.2
- Basepair signature
- cWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
9GFT|1|A3|G|53
9GFT|1|A3|G|54
9GFT|1|A3|U|55
9GFT|1|A3|U|56
9GFT|1|A3|C|57
9GFT|1|A3|G|58
9GFT|1|A3|A|59
9GFT|1|A3|A|60
9GFT|1|A3|U|61
9GFT|1|A3|C|62
9GFT|1|A3|C|63
Current chains
- Chain A3
- A-site tRNA
Nearby chains
- Chain AV
- Large subunit ribosomal RNA; LSU rRNA
- Chain Ah
- 50S ribosomal protein L16
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