HL_9GFT_062

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

9GFT|1|AA|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GFT_062 not in the Motif Atlas

Homologous match to HL_5J7L_024

Geometric discrepancy: 0.1544

The information below is about HL_5J7L_024

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

9GFT|1|AA|G|1089
9GFT|1|AA|U|1090
9GFT|1|AA|U|1091
9GFT|1|AA|A|1092
9GFT|1|AA|A|1093
9GFT|1|AA|G|1094
9GFT|1|AA|U|1095
9GFT|1|AA|C|1096

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

Small ribosomal subunit protein uS2

Chain AG

Small ribosomal subunit protein uS7