HL_9GFT_077

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GFT_077 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.2346

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9GFT|1|AV|U|158
9GFT|1|AV|G|159
9GFT|1|AV|A|160
9GFT|1|AV|A|161
9GFT|1|AV|U|162
9GFT|1|AV|C|163
9GFT|1|AV|C|164
9GFT|1|AV|A|165
9GFT|1|AV|U|166
9GFT|1|AV|A|167
9GFT|1|AV|G|168

Current chains

Chain AV

23S RNA

Nearby chains

Chain As

Large ribosomal subunit protein bL28