HL_9GFT_105

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GFT_105 not in the Motif Atlas

Homologous match to HL_5J7L_167

Geometric discrepancy: 0.1173

The information below is about HL_5J7L_167

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9GFT|1|AV|C|1363
9GFT|1|AV|G|1364
9GFT|1|AV|A|1365
9GFT|1|AV|A|1366
9GFT|1|AV|A|1367
9GFT|1|AV|G|1368

Current chains

Chain AV

23S RNA

Nearby chains

Chain As

Large ribosomal subunit protein bL28

Chain Ax

Large ribosomal subunit protein bL34