HL_9GHH_075
3D structure
- PDB id
- 9GHH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 9GHH|1|F|C|16, 9GHH|1|F|G|18, 9GHH|1|F|G|19, 9GHH|1|F|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9GHH_075 not in the Motif Atlas
- Homologous match to HL_9DFC_103
- Geometric discrepancy: 0.1551
- The information below is about HL_9DFC_103
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_93616.2
- Basepair signature
- cWW-cWS-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
9GHH|1|F|C|13
9GHH|1|F|A|14
9GHH|1|F|G|15
9GHH|1|F|C|16
9GHH|1|F|C|17
9GHH|1|F|U|17|||A
9GHH|1|F|G|18
9GHH|1|F|G|19
9GHH|1|F|U|20
9GHH|1|F|A|21
9GHH|1|F|G|22
Current chains
- Chain F
- E-site tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain J
- 50S ribosomal protein L5
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