HL_9GHH_090

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AAGUAACUGU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHH_090 not in the Motif Atlas

Geometric match to HL_4TUE_219

Geometric discrepancy: 0.328

The information below is about HL_4TUE_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9GHH|1|a|A|470
9GHH|1|a|A|471
9GHH|1|a|G|472
9GHH|1|a|U|473
9GHH|1|a|A|474
9GHH|1|a|A|475
9GHH|1|a|C|476
9GHH|1|a|U|477
9GHH|1|a|G|478
9GHH|1|a|U|479

Current chains

Chain a

16S rRNA

Nearby chains

Chain q

30S ribosomal protein S16