3D structure

PDB id
9GHH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
GAUUAGAUACC
Length
11 nucleotides
Bulged bases
9GHH|1|a|U|801
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9GHH_095 not in the Motif Atlas
Homologous match to HL_4LFB_017
Geometric discrepancy: 0.0792
The information below is about HL_4LFB_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.5
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

9GHH|1|a|G|794
9GHH|1|a|A|795
9GHH|1|a|U|796
9GHH|1|a|U|797
9GHH|1|a|A|798
9GHH|1|a|G|799
9GHH|1|a|A|800
9GHH|1|a|U|801
9GHH|1|a|A|802
9GHH|1|a|C|803
9GHH|1|a|C|804

Current chains

Chain a
16S rRNA

Nearby chains

Chain A
Large subunit ribosomal RNA; LSU rRNA
Chain D
Transfer RNA; tRNA
Chain F
Transfer RNA; tRNA
Chain b
mRNA
Chain l
30S ribosomal protein S11

Coloring options:


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