HL_9GMO_019
3D structure
- PDB id
- 9GMO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- ACGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 9GMO|1|A|U|1596, 9GMO|1|A|A|1600, 9GMO|1|A|A|1601
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9GMO_019 not in the Motif Atlas
- Homologous match to HL_8C3A_020
- Geometric discrepancy: 0.0762
- The information below is about HL_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.8
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
9GMO|1|A|A|1593
9GMO|1|A|C|1594
9GMO|1|A|G|1595
9GMO|1|A|U|1596
9GMO|1|A|G|1597
9GMO|1|A|C|1598
9GMO|1|A|A|1599
9GMO|1|A|A|1600
9GMO|1|A|A|1601
9GMO|1|A|U|1602
Current chains
- Chain A
- 28S rRNA
Nearby chains
- Chain 0
- Cytoplasmic 60S subunit biogenesis factor ZNF622
- Chain E
- 60S ribosomal protein L3
- Chain J
- 60S ribosomal protein L17
- Chain d
- 60S ribosomal protein L37
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