HL_9GMO_044

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

9GMO|1|A|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GMO_044 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.1176

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

9GMO|1|A|U|3796
9GMO|1|A|C|3797
9GMO|1|A|U|3798
9GMO|1|A|A|3799
9GMO|1|A|A|3800
9GMO|1|A|U|3801
9GMO|1|A|U|3802
9GMO|1|A|A|3803
9GMO|1|A|G|3804

Current chains

Chain A

28S rRNA

Nearby chains

Chain P

60S ribosomal protein L23