HL_9GMO_053

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CGU(PSU)CA(PSU)AG

Length

9 nucleotides

Bulged bases

9GMO|1|A|U|4419

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GMO_053 not in the Motif Atlas

Homologous match to HL_8C3A_062

Geometric discrepancy: 0.2945

The information below is about HL_8C3A_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9GMO|1|A|C|4417
9GMO|1|A|G|4418
9GMO|1|A|U|4419
9GMO|1|A|PSU|4420
9GMO|1|A|C|4421
9GMO|1|A|A|4422
9GMO|1|A|PSU|4423
9GMO|1|A|A|4424
9GMO|1|A|G|4425

Current chains

Chain A

28S rRNA

Nearby chains

Chain g

Ubiquitin-60S ribosomal protein L40

Chain p

Large ribosomal subunit protein uL16