HL_9GMO_069

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

9GMO|1|A|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GMO_069 not in the Motif Atlas

Homologous match to HL_8CRE_061

Geometric discrepancy: 0.1281

The information below is about HL_8CRE_061

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

9GMO|1|A|A|4474
9GMO|1|A|G|4475
9GMO|1|A|C|4476
9GMO|1|A|A|4477
9GMO|1|A|G|4478
9GMO|1|A|A|4479
9GMO|1|A|A|4480
9GMO|1|A|U|4481

Current chains

Chain A

28S rRNA

Nearby chains

Chain g

Ubiquitin-60S ribosomal protein L40

Chain o

60S ribosomal protein L9