HL_9HA6_005

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HA6_005 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.2046

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9HA6|1|A|U|158
9HA6|1|A|G|159
9HA6|1|A|A|160
9HA6|1|A|A|161
9HA6|1|A|U|162
9HA6|1|A|C|163
9HA6|1|A|C|164
9HA6|1|A|A|165
9HA6|1|A|U|166
9HA6|1|A|A|167
9HA6|1|A|G|168

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain X

Large ribosomal subunit protein bL28