HL_9HAM_017

3D structure

PDB id

9HAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

C_(L29)-/(L22)- precursor supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

5.06 Å

Loop

Sequence

UUUUGUAUAA

Length

10 nucleotides

Bulged bases

9HAM|1|A|U|571, 9HAM|1|A|A|574

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HAM_017 not in the Motif Atlas

Homologous match to HL_9DFE_016

Geometric discrepancy: 0.5034

The information below is about HL_9DFE_016

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

96

Unit IDs

9HAM|1|A|U|566
9HAM|1|A|U|567
9HAM|1|A|U|568
9HAM|1|A|U|569
9HAM|1|A|G|570
9HAM|1|A|U|571
9HAM|1|A|A|572
9HAM|1|A|U|573
9HAM|1|A|A|574
9HAM|1|A|A|575

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

Large ribosomal subunit protein uL15

Chain R

Large ribosomal subunit protein bL21