HL_9HLZ_002

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

9HLZ|1|AA|A|236, 9HLZ|1|AA|A|239

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HLZ_002 not in the Motif Atlas

Homologous match to HL_7A0S_006

Geometric discrepancy: 0.1055

The information below is about HL_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

9HLZ|1|AA|G|234
9HLZ|1|AA|A|235
9HLZ|1|AA|A|236
9HLZ|1|AA|A|237
9HLZ|1|AA|C|238
9HLZ|1|AA|A|239
9HLZ|1|AA|U|240
9HLZ|1|AA|C|241

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain JJ

Large ribosomal subunit protein uL15m

Chain SS

Large ribosomal subunit protein bL28m