HL_9HLZ_024

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAGAGAAUA

Length

9 nucleotides

Bulged bases

9HLZ|1|AA|A|1586

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HLZ_024 not in the Motif Atlas

Geometric match to HL_4V9F_032

Geometric discrepancy: 0.1912

The information below is about HL_4V9F_032

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_87306.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9HLZ|1|AA|U|1581
9HLZ|1|AA|A|1582
9HLZ|1|AA|G|1583
9HLZ|1|AA|A|1584
9HLZ|1|AA|G|1585
9HLZ|1|AA|A|1586
9HLZ|1|AA|A|1587
9HLZ|1|AA|U|1588
9HLZ|1|AA|A|1589

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain TT

Large ribosomal subunit protein uL29m