HL_9HLZ_030

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAUAAUUGA

Length

9 nucleotides

Bulged bases

9HLZ|1|AA|U|1855

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HLZ_030 not in the Motif Atlas

Homologous match to HL_7A0S_048

Geometric discrepancy: 0.2393

The information below is about HL_7A0S_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61418.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9HLZ|1|AA|U|1849
9HLZ|1|AA|A|1850
9HLZ|1|AA|U|1851
9HLZ|1|AA|A|1852
9HLZ|1|AA|A|1853
9HLZ|1|AA|U|1854
9HLZ|1|AA|U|1855
9HLZ|1|AA|G|1856
9HLZ|1|AA|A|1857

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain II

Large ribosomal subunit protein uL14m

Chain r

Small subunit ribosomal RNA; SSU rRNA