HL_9HLZ_053
3D structure
- PDB id
- 9HLZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UCUGAAAUAUA
- Length
- 11 nucleotides
- Bulged bases
- 9HLZ|1|r|U|334, 9HLZ|1|r|U|336
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9HLZ_053 not in the Motif Atlas
- Geometric match to HL_8P9A_199
- Geometric discrepancy: 0.2622
- The information below is about HL_8P9A_199
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.1
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9HLZ|1|r|U|327
9HLZ|1|r|C|328
9HLZ|1|r|U|329
9HLZ|1|r|G|330
9HLZ|1|r|A|331
9HLZ|1|r|A|332
9HLZ|1|r|A|333
9HLZ|1|r|U|334
9HLZ|1|r|A|335
9HLZ|1|r|U|336
9HLZ|1|r|A|337
Current chains
- Chain r
- 15S mitochondrial rRNA
Nearby chains
- Chain 2
- Small ribosomal subunit protein mS41
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