HL_9HLZ_072
3D structure
- PDB id
- 9HLZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUGAAAUUCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9HLZ_072 not in the Motif Atlas
- Homologous match to HL_6CZR_100
- Geometric discrepancy: 0.1961
- The information below is about HL_6CZR_100
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_02887.2
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9HLZ|1|r|C|1382
9HLZ|1|r|U|1383
9HLZ|1|r|G|1384
9HLZ|1|r|A|1385
9HLZ|1|r|A|1386
9HLZ|1|r|A|1387
9HLZ|1|r|U|1388
9HLZ|1|r|U|1389
9HLZ|1|r|C|1390
9HLZ|1|r|G|1391
Current chains
- Chain r
- 15S mitochondrial rRNA
Nearby chains
- Chain M
- Small ribosomal subunit protein uS13m
- Chain N
- Small ribosomal subunit protein uS14m
- Chain S
- Small ribosomal subunit protein uS19m
- Chain X
- Small ribosomal subunit protein mS33
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