HL_9HM0_002

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

9HM0|1|AA|A|236, 9HM0|1|AA|A|239

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HM0_002 not in the Motif Atlas

Homologous match to HL_7A0S_006

Geometric discrepancy: 0.1145

The information below is about HL_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

9HM0|1|AA|G|234
9HM0|1|AA|A|235
9HM0|1|AA|A|236
9HM0|1|AA|A|237
9HM0|1|AA|C|238
9HM0|1|AA|A|239
9HM0|1|AA|U|240
9HM0|1|AA|C|241

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain JJ

Large ribosomal subunit protein uL15m

Chain SS

Large ribosomal subunit protein bL28m