HL_9HM0_004
3D structure
- PDB id
- 9HM0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGGUGAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9HM0_004 not in the Motif Atlas
- Homologous match to HL_7A0S_008
- Geometric discrepancy: 0.203
- The information below is about HL_7A0S_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_76371.2
- Basepair signature
- cWW-tSH-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
9HM0|1|AA|U|286
9HM0|1|AA|G|287
9HM0|1|AA|G|288
9HM0|1|AA|U|289
9HM0|1|AA|G|290
9HM0|1|AA|A|291
9HM0|1|AA|G|292
Current chains
- Chain AA
- 21S mitochondrial rRNA
Nearby chains
- Chain JJ
- Large ribosomal subunit protein uL15m
- Chain SS
- Large ribosomal subunit protein bL28m
- Chain ZZ
- Large ribosomal subunit protein bL35m
- Chain t
- Transfer RNA; tRNA
Coloring options: