HL_9HM0_030

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAUAAUUGA

Length

9 nucleotides

Bulged bases

9HM0|1|AA|U|1855

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HM0_030 not in the Motif Atlas

Homologous match to HL_7A0S_048

Geometric discrepancy: 0.2386

The information below is about HL_7A0S_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61418.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9HM0|1|AA|U|1849
9HM0|1|AA|A|1850
9HM0|1|AA|U|1851
9HM0|1|AA|A|1852
9HM0|1|AA|A|1853
9HM0|1|AA|U|1854
9HM0|1|AA|U|1855
9HM0|1|AA|G|1856
9HM0|1|AA|A|1857

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain II

Large ribosomal subunit protein uL14m

Chain r

Small subunit ribosomal RNA; SSU rRNA