HL_9HM0_040

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGUAGAUAU

Length

9 nucleotides

Bulged bases

9HM0|1|AA|U|2739

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HM0_040 not in the Motif Atlas

Homologous match to HL_7A0S_059

Geometric discrepancy: 0.2776

The information below is about HL_7A0S_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9HM0|1|AA|A|2737
9HM0|1|AA|G|2738
9HM0|1|AA|U|2739
9HM0|1|AA|A|2740
9HM0|1|AA|G|2741
9HM0|1|AA|A|2742
9HM0|1|AA|U|2743
9HM0|1|AA|A|2744
9HM0|1|AA|U|2745

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain 00

Large ribosomal subunit protein bL36m

Chain FF

Large ribosomal subunit protein uL6m

Chain KK

Large ribosomal subunit protein uL16m