HL_9HM0_041

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUGUAAAAG

Length

9 nucleotides

Bulged bases

9HM0|1|AA|U|2795, 9HM0|1|AA|G|2796

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HM0_041 not in the Motif Atlas

Homologous match to HL_7A0S_060

Geometric discrepancy: 0.1288

The information below is about HL_7A0S_060

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9HM0|1|AA|U|2794
9HM0|1|AA|U|2795
9HM0|1|AA|G|2796
9HM0|1|AA|U|2797
9HM0|1|AA|A|2798
9HM0|1|AA|A|2799
9HM0|1|AA|A|2800
9HM0|1|AA|A|2801
9HM0|1|AA|G|2802

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain 00

Large ribosomal subunit protein bL36m

Chain FF

Large ribosomal subunit protein uL6m