HL_9HM0_053

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCUGAAAUAUA

Length

11 nucleotides

Bulged bases

9HM0|1|r|U|334, 9HM0|1|r|U|336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HM0_053 not in the Motif Atlas

Geometric match to HL_8P9A_199

Geometric discrepancy: 0.3511

The information below is about HL_8P9A_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86432.1

Basepair signature

cWW-tWH-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

9HM0|1|r|U|327
9HM0|1|r|C|328
9HM0|1|r|U|329
9HM0|1|r|G|330
9HM0|1|r|A|331
9HM0|1|r|A|332
9HM0|1|r|A|333
9HM0|1|r|U|334
9HM0|1|r|A|335
9HM0|1|r|U|336
9HM0|1|r|A|337

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain 2

Small ribosomal subunit protein mS41

Chain P

Small ribosomal subunit protein bS16m