HL_9I5T_014

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UUAAAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I5T_014 not in the Motif Atlas

Geometric match to HL_5VPO_138

Geometric discrepancy: 0.1875

The information below is about HL_5VPO_138

Detailed Annotation

Pseudoknot geometry

Broad Annotation

Pseudoknot geometry

Motif group

HL_46333.1

Basepair signature

cWW-R-cSH

Number of instances in this motif group

11

Unit IDs

9I5T|1|A|U|672
9I5T|1|A|U|673
9I5T|1|A|A|674
9I5T|1|A|A|675
9I5T|1|A|A|676
9I5T|1|A|A|677
9I5T|1|A|G|678

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

Large ribosomal subunit protein bL33

Chain 7

Large ribosomal subunit protein bL35