HL_9I88_053

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

9I88|1|A|A|2295, 9I88|1|A|C|2302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I88_053 not in the Motif Atlas

Homologous match to HL_7A0S_053

Geometric discrepancy: 0.1174

The information below is about HL_7A0S_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

13

Unit IDs

9I88|1|A|C|2291
9I88|1|A|U|2292
9I88|1|A|A|2293
9I88|1|A|A|2294
9I88|1|A|A|2295
9I88|1|A|A|2296
9I88|1|A|G|2297
9I88|1|A|G|2298
9I88|1|A|U|2299
9I88|1|A|A|2300
9I88|1|A|A|2301
9I88|1|A|C|2302
9I88|1|A|G|2303

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain P

Large ribosomal subunit protein uL16

Chain Z

Large ribosomal subunit protein bL27