HL_9I88_100
3D structure
- PDB id
- 9I88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- CUGCAACUCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9I88_100 not in the Motif Atlas
- Homologous match to HL_6CZR_100
- Geometric discrepancy: 0.3301
- The information below is about HL_6CZR_100
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_02887.2
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9I88|1|a|C|1325
9I88|1|a|U|1326
9I88|1|a|G|1327
9I88|1|a|C|1328
9I88|1|a|A|1329
9I88|1|a|A|1330
9I88|1|a|C|1331
9I88|1|a|U|1332
9I88|1|a|C|1333
9I88|1|a|G|1334
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain n
- Small ribosomal subunit protein uS13
- Chain o
- Small ribosomal subunit protein uS14B
- Chain t
- Small ribosomal subunit protein uS19
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