HL_9JMK_042

3D structure

PDB id

9JMK (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Ribosomal Subunit precursor state III

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

9JMK|1|A|A|2268, 9JMK|1|A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JMK_042 not in the Motif Atlas

Homologous match to HL_7A0S_053

Geometric discrepancy: 0.1753

The information below is about HL_7A0S_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

13

Unit IDs

9JMK|1|A|C|2264
9JMK|1|A|U|2265
9JMK|1|A|A|2266
9JMK|1|A|A|2267
9JMK|1|A|A|2268
9JMK|1|A|G|2269
9JMK|1|A|A|2270
9JMK|1|A|G|2271
9JMK|1|A|U|2272
9JMK|1|A|A|2273
9JMK|1|A|A|2274
9JMK|1|A|C|2275
9JMK|1|A|G|2276

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L27