HL_9KZU_098

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

9KZU|1|S2|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZU|1|S2|G|1054
9KZU|1|S2|A|1055
9KZU|1|S2|U|1056
9KZU|1|S2|C|1057
9KZU|1|S2|A|1058
9KZU|1|S2|G|1059
9KZU|1|S2|A|1060
9KZU|1|S2|U|1061
9KZU|1|S2|A|1062
9KZU|1|S2|C|1063
9KZU|1|S2|C|1064

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain SF

40S ribosomal protein S5

Chain SO

40S ribosomal protein S14

Chain zv

mRNA

Chain zy

Transfer RNA; tRNA