HL_9MKK_072

3D structure

PDB id

9MKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

9MKK|1|a|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MKK_072 not in the Motif Atlas

Geometric match to HL_8CRE_047

Geometric discrepancy: 0.1661

The information below is about HL_8CRE_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

9MKK|1|a|G|1910
9MKK|1|a|U|1911
9MKK|1|a|A|1912
9MKK|1|a|A|1913
9MKK|1|a|C|1914
9MKK|1|a|U|1915
9MKK|1|a|A|1916
9MKK|1|a|U|1917
9MKK|1|a|A|1918
9MKK|1|a|A|1919
9MKK|1|a|C|1920

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain Z

Transfer RNA; tRNA