HL_9MKK_087

3D structure

PDB id

9MKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

9MKK|1|a|U|2797, 9MKK|1|a|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MKK_087 not in the Motif Atlas

Geometric match to HL_6VMY_004

Geometric discrepancy: 0.2913

The information below is about HL_6VMY_004

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

9MKK|1|a|C|2795
9MKK|1|a|U|2796
9MKK|1|a|U|2797
9MKK|1|a|U|2798
9MKK|1|a|A|2799
9MKK|1|a|A|2800
9MKK|1|a|G|2801

Current chains

Chain a

23S rRNA

Nearby chains