HL_9N9J_076

3D structure

PDB id

9N9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a GRP94 folding intermediate engaged with a CCDC134- and FKBP11-bound secretory translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

9N9J|1|u3|C|17, 9N9J|1|u3|G|18, 9N9J|1|u3|G|19, 9N9J|1|u3|A|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N9J_076 not in the Motif Atlas

Homologous match to HL_1N78_001

Geometric discrepancy: 0.3625

The information below is about HL_1N78_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78347.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

8

Unit IDs

9N9J|1|u3|C|13
9N9J|1|u3|A|14
9N9J|1|u3|G|15
9N9J|1|u3|U|16
9N9J|1|u3|C|17
9N9J|1|u3|G|18
9N9J|1|u3|G|19
9N9J|1|u3|U|20
9N9J|1|u3|A|21
9N9J|1|u3|G|22

Current chains

Chain u3

tRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LJ

Large ribosomal subunit protein uL5