HL_9NDP_102

3D structure

PDB id

9NDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

9NDP|1|K|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NDP|1|K|G|1054
9NDP|1|K|A|1055
9NDP|1|K|U|1056
9NDP|1|K|C|1057
9NDP|1|K|A|1058
9NDP|1|K|G|1059
9NDP|1|K|A|1060
9NDP|1|K|U|1061
9NDP|1|K|A|1062
9NDP|1|K|C|1063
9NDP|1|K|C|1064

Current chains

Chain K

18S rRNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain 4

mRNA

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain LL

Small ribosomal subunit protein eS26

Chain MM

Small ribosomal subunit protein uS11