HL_9NJV_085

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

9NJV|1|R3|U|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJV_085 not in the Motif Atlas

Homologous match to HL_5J7L_017

Geometric discrepancy: 0.1172

The information below is about HL_5J7L_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9NJV|1|R3|G|786
9NJV|1|R3|A|787
9NJV|1|R3|U|788
9NJV|1|R3|U|789
9NJV|1|R3|A|790
9NJV|1|R3|G|791
9NJV|1|R3|A|792
9NJV|1|R3|U|793
9NJV|1|R3|A|794
9NJV|1|R3|C|795
9NJV|1|R3|C|796

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain M

mRNA

Chain R1

Large subunit ribosomal RNA; LSU rRNA

Chain T

Transfer RNA; tRNA

Chain sk

Small ribosomal subunit protein uS11

Chain su

Small ribosomal subunit protein bS21