HL_9OFV_007
3D structure
- PDB id
- 9OFV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.16 Å
Loop
- Sequence
- GUGAGAAUC
- Length
- 9 nucleotides
- Bulged bases
- 9OFV|1|f|G|218, 9OFV|1|f|A|219, 9OFV|1|f|G|220
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9OFV_007 not in the Motif Atlas
- Geometric match to HL_8CRE_007
- Geometric discrepancy: 0.0512
- The information below is about HL_8CRE_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_27670.2
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 13
Unit IDs
9OFV|1|f|G|216
9OFV|1|f|U|217
9OFV|1|f|G|218
9OFV|1|f|A|219
9OFV|1|f|G|220
9OFV|1|f|A|221
9OFV|1|f|A|222
9OFV|1|f|U|223
9OFV|1|f|C|224
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain L
- 60S ribosomal protein L26-A
- Chain i
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain l
- Large ribosomal subunit protein uL4A
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