HL_9OFV_037
3D structure
- PDB id
- 9OFV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.16 Å
Loop
- Sequence
- GUUAUCUUU
- Length
- 9 nucleotides
- Bulged bases
- 9OFV|1|f|U|1687
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9OFV_037 not in the Motif Atlas
- Geometric match to HL_8CRE_036
- Geometric discrepancy: 0.0912
- The information below is about HL_8CRE_036
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- Pseudoknot geometry
- Motif group
- HL_77082.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
9OFV|1|f|G|1680
9OFV|1|f|U|1681
9OFV|1|f|U|1682
9OFV|1|f|A|1683
9OFV|1|f|U|1684
9OFV|1|f|C|1685
9OFV|1|f|U|1686
9OFV|1|f|U|1687
9OFV|1|f|U|1688
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain 5
- 60S ribosomal protein L19-A
- Chain 8
- 60S ribosomal protein L22-A
- Chain e
- E3 ubiquitin-protein ligase listerin
Coloring options: