HL_9OFV_048

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

9OFV|1|f|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9OFV_048 not in the Motif Atlas

Geometric match to HL_8CRE_048

Geometric discrepancy: 0.0686

The information below is about HL_8CRE_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9OFV|1|f|U|2292
9OFV|1|f|C|2293
9OFV|1|f|U|2294
9OFV|1|f|A|2295
9OFV|1|f|A|2296
9OFV|1|f|U|2297
9OFV|1|f|U|2298
9OFV|1|f|A|2299
9OFV|1|f|G|2300

Current chains

Chain f

25S rRNA

Nearby chains

Chain I

60S ribosomal protein L23-A

Chain x

Transfer RNA; tRNA