HL_9OFV_061

3D structure

PDB id

9OFV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

9OFV|1|f|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9OFV_061 not in the Motif Atlas

Geometric match to HL_8P9A_173

Geometric discrepancy: 0.0851

The information below is about HL_8P9A_173

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9OFV|1|f|A|2897
9OFV|1|f|G|2898
9OFV|1|f|C|2899
9OFV|1|f|A|2900
9OFV|1|f|G|2901
9OFV|1|f|A|2902
9OFV|1|f|A|2903
9OFV|1|f|U|2904

Current chains

Chain f

25S rRNA

Nearby chains

Chain Z

Ubiquitin-60S ribosomal protein L40

Chain q

60S ribosomal protein L9-A