HL_9P8I_110

3D structure

PDB id

9P8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.89 Å

Loop

Sequence

GA(PSU)CAGAUACC

Length

11 nucleotides

Bulged bases

9P8I|1|S2|U|1061

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P8I|1|S2|G|1054
9P8I|1|S2|A|1055
9P8I|1|S2|PSU|1056
9P8I|1|S2|C|1057
9P8I|1|S2|A|1058
9P8I|1|S2|G|1059
9P8I|1|S2|A|1060
9P8I|1|S2|U|1061
9P8I|1|S2|A|1062
9P8I|1|S2|C|1063
9P8I|1|S2|C|1064

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain Pt

Transfer RNA; tRNA

Chain SO

Small ribosomal subunit protein uS11

Chain Sa

40S ribosomal protein S26