HL_9PJ7_004

3D structure

PDB id

9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUUUCGGC

Length

8 nucleotides

Bulged bases

9PJ7|1|A|U|217

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9PJ7_004 not in the Motif Atlas

Geometric match to HL_9E6Q_025

Geometric discrepancy: 0.3254

The information below is about HL_9E6Q_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46211.1

Basepair signature

cWW-cWW-tSW-F

Number of instances in this motif group

10

Unit IDs

9PJ7|1|A|G|214
9PJ7|1|A|U|215
9PJ7|1|A|U|216
9PJ7|1|A|U|217
9PJ7|1|A|C|218
9PJ7|1|A|G|219
9PJ7|1|A|G|220
9PJ7|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains