HL_9PKG_110

3D structure

PDB id

9PKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GA(PSU)CAGAUACC

Length

11 nucleotides

Bulged bases

9PKG|1|S2|U|1061

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PKG|1|S2|G|1054
9PKG|1|S2|A|1055
9PKG|1|S2|PSU|1056
9PKG|1|S2|C|1057
9PKG|1|S2|A|1058
9PKG|1|S2|G|1059
9PKG|1|S2|A|1060
9PKG|1|S2|U|1061
9PKG|1|S2|A|1062
9PKG|1|S2|C|1063
9PKG|1|S2|C|1064

Current chains

Chain S2

18S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain Pt

Transfer RNA; tRNA

Chain SO

Small ribosomal subunit protein uS11

Chain Sa

40S ribosomal protein S26