HL_9QEG_081

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

9QEG|1|Aa|G|1105

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QEG_081 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1072

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

9QEG|1|Aa|G|1100
9QEG|1|Aa|U|1101
9QEG|1|Aa|U|1102
9QEG|1|Aa|A|1103
9QEG|1|Aa|A|1104
9QEG|1|Aa|G|1105
9QEG|1|Aa|U|1106
9QEG|1|Aa|C|1107

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ag

Small ribosomal subunit protein uS7