HL_9QEG_084

3D structure

PDB id

9QEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GAUCAGCAUGC

Length

11 nucleotides

Bulged bases

9QEG|1|Aa|U|1374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QEG_084 not in the Motif Atlas

Homologous match to HL_5J7L_029

Geometric discrepancy: 0.1107

The information below is about HL_5J7L_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9QEG|1|Aa|G|1366
9QEG|1|Aa|A|1367
9QEG|1|Aa|U|1368
9QEG|1|Aa|C|1369
9QEG|1|Aa|A|1370
9QEG|1|Aa|G|1371
9QEG|1|Aa|C|1372
9QEG|1|Aa|A|1373
9QEG|1|Aa|U|1374
9QEG|1|Aa|G|1375
9QEG|1|Aa|C|1376

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ai

Small ribosomal subunit protein uS9

Chain Aj

Small ribosomal subunit protein uS10

Chain An

Small ribosomal subunit protein uS14B