HL_9QIW_007

3D structure

PDB id

9QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CUUGGGAAUG

Length

10 nucleotides

Bulged bases

9QIW|1|L5|G|294, 9QIW|1|L5|A|295, 9QIW|1|L5|A|296

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QIW_007 not in the Motif Atlas

Homologous match to HL_8CRE_008

Geometric discrepancy: 0.1557

The information below is about HL_8CRE_008

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

9QIW|1|L5|C|289
9QIW|1|L5|U|290
9QIW|1|L5|U|291
9QIW|1|L5|G|292
9QIW|1|L5|G|293
9QIW|1|L5|G|294
9QIW|1|L5|A|295
9QIW|1|L5|A|296
9QIW|1|L5|U|297
9QIW|1|L5|G|298

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain LN

60S ribosomal protein L15

Chain La

60S ribosomal protein L27a