HL_9QQA_088

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

G(PSU)A(A2M)C(PSU)A(PSU)GAC

Length

11 nucleotides

Bulged bases

9QQA|1|B5|A2M|3492

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQA_088 not in the Motif Atlas

Geometric match to HL_8CRE_047

Geometric discrepancy: 0.1312

The information below is about HL_8CRE_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

9QQA|1|B5|G|3489
9QQA|1|B5|PSU|3490
9QQA|1|B5|A|3491
9QQA|1|B5|A2M|3492
9QQA|1|B5|C|3493
9QQA|1|B5|PSU|3494
9QQA|1|B5|A|3495
9QQA|1|B5|PSU|3496
9QQA|1|B5|G|3497
9QQA|1|B5|A|3498
9QQA|1|B5|C|3499

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain AT

Transfer RNA; tRNA