HL_9QQA_106

3D structure

PDB id

9QQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and NMT1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGGAAAGGGG

Length

10 nucleotides

Bulged bases

9QQA|1|B5|A|4649, 9QQA|1|B5|A|4650, 9QQA|1|B5|G|4653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQA_106 not in the Motif Atlas

Homologous match to HL_8GLP_074

Geometric discrepancy: 0.4116

The information below is about HL_8GLP_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31089.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

9QQA|1|B5|C|4645
9QQA|1|B5|G|4646
9QQA|1|B5|G|4647
9QQA|1|B5|A|4648
9QQA|1|B5|A|4649
9QQA|1|B5|A|4650
9QQA|1|B5|G|4651
9QQA|1|B5|G|4652
9QQA|1|B5|G|4653
9QQA|1|B5|G|4654

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BO

Large ribosomal subunit protein uL13