HL_9QQB_087

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

G(PSU)A(A2M)C(PSU)A(PSU)GAC

Length

11 nucleotides

Bulged bases

9QQB|1|B5|A2M|3492

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQB_087 not in the Motif Atlas

Geometric match to HL_8CRE_047

Geometric discrepancy: 0.1385

The information below is about HL_8CRE_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

9QQB|1|B5|G|3489
9QQB|1|B5|PSU|3490
9QQB|1|B5|A|3491
9QQB|1|B5|A2M|3492
9QQB|1|B5|C|3493
9QQB|1|B5|PSU|3494
9QQB|1|B5|A|3495
9QQB|1|B5|PSU|3496
9QQB|1|B5|G|3497
9QQB|1|B5|A|3498
9QQB|1|B5|C|3499

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain AT

Transfer RNA; tRNA