HL_9QQB_088

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

9QQB|1|B5|U|3534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9QQB_088 not in the Motif Atlas

Geometric match to HL_8CRE_048

Geometric discrepancy: 0.1462

The information below is about HL_8CRE_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9QQB|1|B5|U|3528
9QQB|1|B5|C|3529
9QQB|1|B5|U|3530
9QQB|1|B5|A|3531
9QQB|1|B5|A|3532
9QQB|1|B5|U|3533
9QQB|1|B5|U|3534
9QQB|1|B5|A|3535
9QQB|1|B5|G|3536

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain BV

Ribosomal protein L23