HL_9R9O_024

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

9R9O|1|C1|A|913, 9R9O|1|C1|G|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9R9O_024 not in the Motif Atlas

Homologous match to HL_9PN5_021

Geometric discrepancy: 0.0767

The information below is about HL_9PN5_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28253.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

9R9O|1|C1|G|910
9R9O|1|C1|C|911
9R9O|1|C1|G|912
9R9O|1|C1|A|913
9R9O|1|C1|A|914
9R9O|1|C1|A|915
9R9O|1|C1|G|916
9R9O|1|C1|A|917
9R9O|1|C1|C|918

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L2-A

Chain LN

60S ribosomal protein L15-A

Chain Lj

60S ribosomal protein L37-A